function [data, auxData, metaData, txtData, weights] = mydata_Thomomys_bottae
%% set metaData
metaData.phylum     = 'Chordata'; 
metaData.class      = 'Mammalia'; 
metaData.order      = 'Rodentia'; 
metaData.family     = 'Geomyidae';
metaData.species    = 'Thomomys_bottae'; 
metaData.species_en = 'Botta''s pocket gopher'; 

metaData.ecoCode.climate = {'BSk'};
metaData.ecoCode.ecozone = {'THn'};
metaData.ecoCode.habitat = {'0iTd'};
metaData.ecoCode.embryo  = {'Tv'};
metaData.ecoCode.migrate = {'TT'};
metaData.ecoCode.food    = {'bxM', 'xiHs'};
metaData.ecoCode.gender  = {'Dg'};
metaData.ecoCode.reprod  = {'O'};

metaData.T_typical  = C2K(36); % K, body temp
metaData.data_0     = {'tg'; 'ax'; 'ap'; 'am'; 'Wwb'; 'Wwi'; 'Ri'}; 
metaData.data_1     = {'t-Ww'}; 

metaData.COMPLETE = 2.5; % using criteria of LikaKear2011

metaData.author   = {'Bas Kooijman'};    
metaData.date_subm = [2023 01 19];              
metaData.email    = {'bas.kooijman@vu.nl'};            
metaData.address  = {'VU University, Amsterdam'};   

metaData.author_mod_1   = {'Bas Kooijman'};    
metaData.date_mod_1     = [2023 04 14];              
metaData.email_mod_1    = {'bas.kooijman@vu.nl'};            
metaData.address_mod_1  = {'VU University, Amsterdam'};   

metaData.curator     = {'Starrlight Augustine'};
metaData.email_cur   = {'starrlight@tecnico.ulisboa.pt'}; 
metaData.date_acc    = [2023 04 14];

%% set data
% zero-variate data

data.tg = 19;    units.tg = 'd';     label.tg = 'gestation time';             bibkey.tg = 'AnAge';   
  temp.tg = C2K(36);  units.temp.tg = 'K'; label.temp.tg = 'temperature';
data.tx = 38;    units.tx = 'd';     label.tx = 'time since birth at weaning'; bibkey.tx = 'AnAge';   
  temp.tx = C2K(36.2);  units.temp.tx = 'K'; label.temp.tx = 'temperature';
data.tp = 319 ;   units.tp = 'd';     label.tp = 'time since birth at puberty for female'; bibkey.tp = 'AnAge';
  temp.tp = C2K(36); units.temp.tp = 'K'; label.temp.tp = 'temperature';
data.am = 6.1*365;    units.am = 'd'; label.am = 'life span';                bibkey.am = 'AnAge';   
  temp.am = C2K(36); units.temp.am = 'K'; label.temp.am = 'temperature';

data.Wwb = 3.3 ;   units.Wwb = 'g';     label.Wwb = 'wet weight at birth';     bibkey.Wwb = 'AnAge';
data.Wwi = 160; units.Wwi = 'g';  label.Wwi = 'ultimate wet weight for females';     bibkey.Wwi = 'Wiki';
  comment.Wwi = '120-200 g';
data.Wwim = 205.5 ; units.Wwim = 'g';  label.Wwim = 'ultimate wet weight for males';     bibkey.Wwim = 'Wiki';
  comment.Wwim = '160-250 g';

data.Ri  = 5.5/ 365;  units.Ri  = '#/d'; label.Ri  = 'maximum reprod rate';  bibkey.Ri  = 'AnAge';   
  temp.Ri = C2K(36); units.temp.Ri = 'K'; label.temp.Ri = 'temperature';
  comment.Ri = '5.5 pups per litter; 1 litter per yr';

% uni-variate data
% time-weight
data.tWw_f = [ ... % time since birth (d), weight (g)
67.723	54.448
146.139	53.101
235.248	60.246
345.743	71.561
431.287	75.875
520.396	70.802
616.634	71.390
709.307	77.491
809.109	84.188
876.832	81.948
973.069	71.807
1051.485	77.761
1144.158	90.121
1365.149	78.331
1443.564	79.219
1693.069	73.834];
units.tWw_f = {'d', 'g'};  label.tWw_f = {'time since birth', 'wet weight', 'females'};  
temp.tWw_f  = C2K(36);  units.temp.tWw_f = 'K'; label.temp.tWw_f = 'temperature';
bibkey.tWw_f = 'HowaChil1959';
%
data.tWw_m = [ ... % time since birth (d), weight (g)
60.594	71.138
149.703	70.683
235.248	84.087
335.050	101.363
427.723	99.717
523.960	103.285
609.505	117.731
705.743	119.362
794.851	115.332
973.069	137.072
1058.614	125.144];
units.tWw_m = {'d', 'g'};  label.tWw_m = {'time since birth', 'wet weight', 'males'};  
temp.tWw_m  = C2K(36);  units.temp.tWw_m = 'K'; label.temp.tWw_m = 'temperature';
bibkey.tWw_m = 'HowaChil1959';

%% set weights for all real data
weights = setweights(data, []);
weights.tWw_f = 3 * weights.tWw_f;
weights.tWw_m = 3 * weights.tWw_m;
weights.tg = 0 * weights.tg;

%% set pseudodata and respective weights
[data, units, label, weights] = addpseudodata(data, units, label, weights);

%% pack auxData and txtData for output
auxData.temp = temp;
txtData.units = units;
txtData.label = label;
txtData.bibkey = bibkey;
txtData.comment = comment;

%% Group plots
set1 = {'tWw_f','tWw_m'}; subtitle1 = {'Data for females, males'};
metaData.grp.sets = {set1};
metaData.grp.subtitle = {subtitle1};

%% Discussion points
D1 = 'males are assumed to differ from females by {p_Am} only';
D2 = 'mod_1: males have equal state variables at b, compared to females';
metaData.discussion = struct('D1',D1, 'D2',D2);  

%% Links
metaData.links.id_CoL = '7X2SM'; % Cat of Life
metaData.links.id_ITIS = '180222'; % ITIS
metaData.links.id_EoL = '4456670'; % Ency of Life
metaData.links.id_Wiki = 'Thomomys_bottae'; % Wikipedia
metaData.links.id_ADW = 'Thomomys_bottae'; % ADW
metaData.links.id_Taxo = '62040'; % Taxonomicon
metaData.links.id_WoRMS = ''; % WoRMS
metaData.links.id_MSW3 = '12800161'; % MSW3
metaData.links.id_AnAge = 'Thomomys_bottae'; % AnAge

%% References
bibkey = 'Wiki'; type = 'Misc'; bib = ...
'howpublished = {\url{http://en.wikipedia.org/wiki/Thomomys_bottae}}';
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'Kooy2010'; type = 'Book'; bib = [ ...  % used in setting of chemical parameters and pseudodata
'author = {Kooijman, S.A.L.M.}, ' ...
'year = {2010}, ' ...
'title  = {Dynamic Energy Budget theory for metabolic organisation}, ' ...
'publisher = {Cambridge Univ. Press, Cambridge}, ' ...
'pages = {Table 4.2 (page 150), 8.1 (page 300)}, ' ...
'howpublished = {\url{../../../bib/Kooy2010.html}}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'HowaChil1959'; type = 'Article'; bib = [ ...  
'author = {Walter E. Howard and Henry E. Childs}, ' ...
'year = {1959}, ' ...
'title  = {ECOLOGY OF POCKET GOPHERS WITH EMPHASIS ON \emph{Thomomys bottae mewa}}, ' ...
'journal = {Hilgardia}, ' ...
'volume = {29(7)}, ' ...
'pages = {277-358}'];
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];
%
bibkey = 'AnAge'; type = 'Misc'; bib = ...
'howpublished = {\url{http://genomics.senescence.info/species/entry.php?species=Thomomys_bottae}}';
metaData.biblist.(bibkey) = ['''@', type, '{', bibkey, ', ' bib, '}'';'];

